Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
BLCA rs4705852 chr5:131602807 A/G 1.12E-6 400 18.62 19.13 14.37 KM Plot
BLCA rs4705929 chr5:131584178 G/T 1.81E-6 401 21.37 17.53 14.37 KM Plot
BLCA rs4705931 chr5:131588345 T/C 2.21E-6 400 21.27 18.1 14.27 KM Plot
BLCA rs55713571 chr13:97516192 T/G 2.08E-5 398 18.07 15.1 15.67 KM Plot
BLCA rs55949457 chr4:119336174 A/G 1.13E-12 398 17.4 20.33 1.38 KM Plot
BLCA rs55963137 chr13:97425002 G/A 1.81E-6 398 17.97 16.45 3.55 KM Plot
BLCA rs56155129 chr13:97506534 A/G 1.05E-6 400 18.23 13.77 37.5 KM Plot
BLCA rs56217716 chr4:119338490 T/G 9.39E-13 400 17.4 20.33 1.38 KM Plot
BLCA rs56410164 chr4:119331625 A/G 1.13E-12 400 17.4 20.15 1.38 KM Plot
BLCA rs59395609 chr13:97515702 T/C 1.07E-5 401 18.07 15.17 21.53 KM Plot
BLCA rs60308342 chr12:123312881 C/T 5.04E-8 404 17.87 16.13 2.7 KM Plot
BLCA rs6129901 chr20:40314444 C/G 2.17E-6 405 4.92 19.6 17.4 KM Plot
BLCA rs61352298 chr5:131600589 G/C 1.12E-6 400 18.62 19.13 14.37 KM Plot
BLCA rs6149247 chr5:131582372 AACAATGAAGTATTC/A 2.21E-6 404 21.32 17.67 14.47 KM Plot
BLCA rs61968221 chr13:97499169 C/T 1.62E-6 400 18.23 13.68 21.53 KM Plot